Transcript: lnc-AATK-7:1

Basic information

LNCipedia transcript ID: lnc-AATK-7:1 
LNCipedia gene ID: lnc-AATK-7
Ensembl Gene ID: ENSG00000262662
Ensembl Transcript ID: ENST00000571591
Location (hg38): chr17:80960766-80961713
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 549 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571591.1; CTD-2561B21.3-001; OTTHUMT00000438133.1; NONHSAT056413
Alternative gene names: ENSG00000262662.1; CTD-2561B21.3; OTTHUMG00000177624.1; AC127496.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.6648 non-coding 
CPAT coding probability 10.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AATK-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-6:1
4.0 lnc-AC127496.3-6:1
4.1 lnc-AC127496.3-6:1
5.0 lnc-AC127496.3-6:1
5.1 lnc-NPLOC4-30:1
5.2 lnc-AATK-7:1