Transcript: lnc-ABCA1-11:1

Basic information

LNCipedia transcript ID: lnc-ABCA1-11:1 
LNCipedia gene ID: lnc-ABCA1-11
Location (hg38): chr9:105693392-105695173
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1782 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109342.1|FTMT23400007773.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -131.0897 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA1-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABCA1-11:1
5.0 lnc-ABCA1-11:1
5.1 lnc-ERP44-58:1
5.2 lnc-ABCA1-11:1