Transcript: lnc-ABCA1-3:1

Basic information

LNCipedia transcript ID: lnc-ABCA1-3:1 
LNCipedia gene ID: lnc-ABCA1-3
Location (hg38): chr9:106061354-106064993
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015862; ENST00000445897; ENST00000445897.1; RP11-6F6.1-001; OTTHUMT00000053524.1; NONHSAT133832
Alternative gene names: XLOC_007817; linc-ABCA1-4; ENSG00000225002; RP11-6F6.1; ENSG00000225002.1; OTTHUMG00000020432.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.3189 non-coding 
CPAT coding probability 5.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCA1-2:1
3.1 lnc-ABCA1-3:1
4.0 lnc-ABCA1-3:1
4.1 lnc-ABCA1-3:1
5.0 lnc-ABCA1-3:1
5.1 lnc-ERP44-59:1
5.2 lnc-ABCA1-3:1