Transcript: lnc-ABCA1-3:2

Basic information

LNCipedia transcript ID: lnc-ABCA1-3:2 
LNCipedia gene ID: lnc-ABCA1-3
Ensembl Gene ID: ENSG00000225002
Ensembl Transcript ID: ENST00000445897
Location (hg38): chr9:106061354-106064825
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT133831; ENST00000445897.2
Alternative gene names: ENSG00000225002.2; RP11-6F6.1; AL732323.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.017 non-coding 
CPAT coding probability 5.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCA1-3:2
4.0 lnc-ABCA1-3:2
4.1 lnc-ABCA1-3:2
5.0 lnc-ABCA1-3:2
5.1 lnc-ERP44-59:2
5.2 lnc-ABCA1-3:2