Transcript: lnc-ABCA5-3:2

Basic information

LNCipedia transcript ID: lnc-ABCA5-3:2 
LNCipedia gene ID: lnc-ABCA5-3
Location (hg38): chr17:70150954-70158137
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 263 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT055613; FPKM1_group_13239_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.7394 non-coding 
CPAT coding probability 10.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA5-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCA5-3:2
4.0 lnc-ABCA5-3:2
4.1 lnc-ABCA5-3:2
5.0 lnc-ABCA5-3:2
5.1 lnc-GRB2-65:2
5.2 lnc-ABCA5-3:2