Transcript: lnc-ABCC3-1:1

Basic information

LNCipedia transcript ID: lnc-ABCC3-1:1 
LNCipedia gene ID: lnc-ABCC3-1
Ensembl Gene ID: ENSG00000262967
Ensembl Transcript ID: ENST00000574246
Location (hg38): chr17:50693448-50695449
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 670 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574246.1; RP11-294J22.6-001; OTTHUMT00000437282.1; NONHSAT054708
Alternative gene names: ENSG00000262967.1; RP11-294J22.6; OTTHUMG00000177508.1; AC005921.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.4922 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCC3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCC3-1:1
4.0 lnc-ABCC3-1:1
4.1 lnc-ABCC3-1:1
5.0 lnc-ABCC3-1:1
5.1 lnc-EPN3-6:1
5.2 lnc-ABCC3-1:1