Transcript: lnc-ABCC6-1:2

Basic information

LNCipedia transcript ID: lnc-ABCC6-1:2 
LNCipedia gene ID: lnc-ABCC6-1
Ensembl Gene ID: ENSG00000262848
Ensembl Transcript ID: ENST00000571660
Location (hg38): chr16:16290135-16292242
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571660.1; RP11-517A5.5-001; OTTHUMT00000436264.1; NONHSAT140783
Alternative gene names: ENSG00000262848.1; RP11-517A5.5; OTTHUMG00000177319.1; AC136624.3; AC136624.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8832 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCC6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCC6-1:2
4.0 lnc-ABCC6-1:2
4.1 lnc-ABCC6-1:2
5.0 lnc-ABCC6-1:2
5.1 lnc-MARF1-12:2
5.2 lnc-ABCC6-1:2