Transcript: lnc-ABCD3-2:7

Basic information

LNCipedia transcript ID: lnc-ABCD3-2:7 
LNCipedia gene ID: lnc-ABCD3-2
Ensembl Gene ID: ENSG00000226835
Ensembl Transcript ID: ENST00000418242
Location (hg38): chr1:94247866-94334848
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 814 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418242.2
Alternative gene names: ENSG00000226835.2; RP11-148B18.1; AC097059.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -185.9105 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCD3-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ABCD3-2:7
4.1 lnc-ABCD3-2:7
5.0 lnc-ABCD3-2:7
5.1 lnc-BTBD8-34:1
5.2 lnc-ABCD3-2:7