Transcript: lnc-ABCD3-2:9

Basic information

LNCipedia transcript ID: lnc-ABCD3-2:9 
LNCipedia gene ID: lnc-ABCD3-2
Location (hg38): chr1:94247908-94249492
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 212 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000413103; ENST00000413103.1; RP11-148B18.1-001; OTTHUMT00000029383.1
Alternative gene names: ENSG00000231363; RP11-148B18.1; ENSG00000231363.1; OTTHUMG00000010648.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCD3-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCD3-3:1
3.1 lnc-ABCD3-3:1
4.0 lnc-ABCD3-2:9
4.1 lnc-ABCD3-2:9
5.0 lnc-ABCD3-2:9
5.1 lnc-BTBD8-34:6
5.2 lnc-ABCD3-2:9