Transcript: lnc-ABHD12B-2:1

Basic information

LNCipedia transcript ID: lnc-ABHD12B-2:1 ?
LNCipedia gene ID: lnc-ABHD12B-2
Location (hg19): chr14:51163432-51390015
Strand: +
Class: sense-overlapping
Transcript size: 1894 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000501589
Alternative gene names: ENSG00000247448


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 3 coding ?
Peptide Confidence
SAEAAFVPPLPSR 96.4912280701754%
LLFCRCLFVMPL 94.1860465116279%
ISKICGGSICSASPL 95.7761351636748%
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -10.4058 non-coding ?
CPAT coding probability 1.58% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-ABHD12B-2:1 yes yes

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -571.4
Randfold P-value: 0.001

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-891b 86.15
hsa-miR-373-3p 70.18
hsa-miR-877-3p 68.40
hsa-miR-494 68.07
hsa-miR-517-5p 66.59
hsa-miR-5010-5p 64.39
hsa-miR-520d-3p 64.19
hsa-miR-520a-3p 62.80
hsa-miR-5190 62.74
hsa-miR-520e 62.48
hsa-miR-520c-3p 61.42
hsa-miR-520b 61.17
hsa-miR-513a-3p 60.92
hsa-miR-513c-3p 60.92
hsa-miR-302c-3p 60.54
hsa-miR-487a 60.47
hsa-miR-154-3p 60.40
hsa-miR-302d-3p 60.05
hsa-miR-302a-3p 59.00
hsa-miR-372 58.22
hsa-miR-302b-3p 57.93
hsa-miR-4525 57.59
hsa-miR-491-3p 55.71
hsa-miR-548c-3p 54.44
hsa-miR-4663 54.04
hsa-miR-302e 53.63
hsa-miR-3179 52.81
hsa-miR-3153 52.57
hsa-miR-135a-5p 52.51
hsa-miR-135b-5p 52.51
hsa-miR-577 52.51
hsa-miR-4764-3p 52.16
hsa-miR-4311 51.31
hsa-miR-3680-3p 50.00
hsa-miR-448 50.00

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-ABHD12B-2:1
4.0 lnc-ABHD12B-2:1
1.3 lnc-ABHD12B-1:1