Transcript: lnc-ABHD17A-1:2

Basic information

LNCipedia transcript ID: lnc-ABHD17A-1:2 
LNCipedia gene ID: lnc-ABHD17A-1
Location (hg38): chr19:1874882-1876169
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1288 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565797.1; CTB-31O20.2-001; OTTHUMT00000430887.1; NONHSAT060370
Alternative gene names: ENSG00000261526.1; CTB-31O20.2; OTTHUMG00000175708.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3137 non-coding 
CPAT coding probability 6.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABHD17A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM108A1-1:1
4.0 lnc-FAM108A1-1:1
4.1 lnc-FAM108A1-1:1
5.0 lnc-FAM108A1-1:1
5.1 lnc-ZNF77-62:2
5.2 lnc-ABHD17A-1:2