Transcript: lnc-ABHD3-2:1

Basic information

LNCipedia transcript ID: lnc-ABHD3-2:1 
LNCipedia gene ID: lnc-ABHD3-2
Ensembl Gene ID: ENSG00000264149
Ensembl Transcript ID: ENST00000583436
Location (hg38): chr18:21871446-21893996
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583436.1; RP11-268I9.3-001; OTTHUMT00000445574.1; NONHSAT058594
Alternative gene names: ENSG00000264149.1; RP11-268I9.3; OTTHUMG00000179285.1; AC103987.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.5734 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABHD3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABHD3-2:1
4.0 lnc-ABHD3-2:1
4.1 lnc-ABHD3-2:1
5.0 lnc-ABHD3-2:1
5.1 lnc-SMAD2-204:1
5.2 lnc-ABHD3-2:1