Transcript: lnc-ABI1-1:1

Basic information

LNCipedia transcript ID: lnc-ABI1-1:1 
LNCipedia gene ID: lnc-ABI1-1
Location (hg38): chr10:26664206-26676159
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 319 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000446557.1; RP13-16H11.2-001; OTTHUMT00000047275.1; NONHSAT011851
Alternative gene names: ENSG00000227932.1; RP13-16H11.2; OTTHUMG00000017843.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0759 non-coding 
CPAT coding probability 9.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABI1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABI1-1:1
4.0 lnc-ABI1-1:1
4.1 lnc-ABI1-1:1
5.0 lnc-ABI1-1:1
5.1 lnc-MPP7-32:1
5.2 lnc-ABI1-1:1