Transcript: lnc-ABI1-5:1

Basic information

LNCipedia transcript ID: lnc-ABI1-5:1 
LNCipedia gene ID: lnc-ABI1-5
Ensembl Gene ID: ENSG00000226304
Ensembl Transcript ID: ENST00000452911
Location (hg38): chr10:25924448-25933710
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 481 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017939; ENST00000452911.1; RP11-435M3.2-001; OTTHUMT00000047254.1; NONHSAT011818
Alternative gene names: XLOC_008751; linc-ENKUR-3; ENSG00000226304.1; RP11-435M3.2; OTTHUMG00000017835.1; AL358612.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.6493 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABI1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABI1-4:1
3.1 lnc-ABI1-5:1
4.0 lnc-ABI1-5:1
4.1 lnc-ABI1-5:1
5.0 lnc-ABI1-5:1
5.1 lnc-MPP7-54:2
5.2 lnc-ABI1-5:1