Transcript: lnc-ABI3-2:7

Basic information

LNCipedia transcript ID: lnc-ABI3-2:7 
LNCipedia gene ID: lnc-ABI3-2
RefSeq ID: NR_034161
Location (hg38): chr17:49248243-49258665
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 722 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025106; NR_034161; NR_034161.1
Alternative gene names: XLOC_012230; linc-NGFR-3; FLJ40194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6417 non-coding 
CPAT coding probability 41.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ABI3-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABI3-2:6
3.1 lnc-ABI3-2:7
4.0 lnc-ABI3-2:7
4.1 lnc-ABI3-2:7
5.0 lnc-ABI3-2:7
5.1 lnc-ACSF2-38:6
5.2 lnc-ABI3-2:7