Transcript: lnc-ABI3-2:9

Basic information

LNCipedia transcript ID: lnc-ABI3-2:9 
LNCipedia gene ID: lnc-ABI3-2
Location (hg38): chr17:49252428-49255960
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00025178
Alternative gene names: XLOC_012230; linc-NGFR-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.6324 non-coding 
CPAT coding probability 13.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABI3-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABI3-2:9
3.1 lnc-ABI3-2:9
4.0 lnc-ABI3-2:9
4.1 lnc-ABI3-2:9
5.0 lnc-ABI3-2:9
5.1 lnc-ACSF2-38:9
5.2 lnc-ABI3-2:9