Transcript: lnc-ABRA-3:1

Basic information

LNCipedia transcript ID: lnc-ABRA-3:1 
LNCipedia gene ID: lnc-ABRA-3
Ensembl Gene ID: ENSG00000254021
Ensembl Transcript ID: ENST00000517318
Location (hg38): chr8:106265435-106268741
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517318.1; RP11-778D12.2-001; OTTHUMT00000380408.1; NONHSAT128250
Alternative gene names: ENSG00000254021.1; RP11-778D12.2; OTTHUMG00000164806.1; AC027031.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -369.9534 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABRA-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-778D12.2.1-1:1
4.0 lnc-RP11-778D12.2.1-1:1
4.1 lnc-RP11-778D12.2.1-1:1
5.0 lnc-RP11-778D12.2.1-1:1
5.1 lnc-ZNF706-132:1
5.2 lnc-ABRA-3:1