Transcript: lnc-ABRAXAS1-1:1

Basic information

LNCipedia transcript ID: lnc-ABRAXAS1-1:1 
LNCipedia gene ID: lnc-ABRAXAS1-1
Ensembl Gene ID: ENSG00000249171
Ensembl Transcript ID: ENST00000510169
Location (hg38): chr4:83668510-83731755
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 791 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007787; ENST00000510169; ENST00000510169.1; RP11-767N15.1-001; OTTHUMT00000363957.1; NONHSAT097228
Alternative gene names: XLOC_004002; linc-FAM175A-1; ENSG00000249171; RP11-767N15.1; ENSG00000249171.1; OTTHUMG00000161151.1; AC021192.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7285 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABRAXAS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM175A-1:1
3.1 lnc-FAM175A-1:1
4.0 lnc-FAM175A-1:1
4.1 lnc-FAM175A-1:1
5.0 lnc-FAM175A-1:1
5.1 lnc-LIN54-16:1
5.2 lnc-ABRAXAS1-1:1