Transcript: lnc-ABT1-2:1

Basic information

LNCipedia transcript ID: lnc-ABT1-2:1 
LNCipedia gene ID: lnc-ABT1-2
Location (hg38): chr6:26569324-26574697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2883 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501288; TCONS_00011164; NONHSAT108296
Alternative gene names: ENSG00000244922; XLOC_005212; linc-ABT1; AL121936.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2885 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABT1-2:1
3.1 lnc-ABT1-2:1
4.0 lnc-ABT1-2:1
4.1 lnc-ABT1-2:1
5.0 lnc-ABT1-2:1
5.1 lnc-CARMIL1-43:1
5.2 lnc-ABT1-2:1