Transcript: lnc-ABT1-3:10

Basic information

LNCipedia transcript ID: lnc-ABT1-3:10 
LNCipedia gene ID: lnc-ABT1-3
Ensembl Gene ID: ENSG00000261584
Ensembl Transcript ID: ENST00000562904
Location (hg38): chr6:26686241-26687964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1724 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562904.1; RP11-457M11.5-001; OTTHUMT00000431259.2
Alternative gene names: ENSG00000261584.1; RP11-457M11.5; OTTHUMG00000175906.2; AL513548.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.4402 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABT1-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABT1-3:10
4.0 lnc-ABT1-3:10
4.1 lnc-ABT1-3:10
5.0 lnc-ABT1-3:10
5.1 lnc-CARMIL1-46:14
5.2 lnc-ABT1-3:10