Transcript: lnc-ABT1-3:4

Basic information

LNCipedia transcript ID: lnc-ABT1-3:4 
LNCipedia gene ID: lnc-ABT1-3
Location (hg38): chr6:26674865-26687720
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00011749
Alternative gene names: XLOC_005214; linc-HIST1H2AG-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.4402 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABT1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABT1-3:4
3.1 lnc-ABT1-3:4
4.0 lnc-ABT1-3:4
4.1 lnc-ABT1-3:4
5.0 lnc-ABT1-3:4
5.1 lnc-CARMIL1-46:6
5.2 lnc-ABT1-3:4