Transcript: lnc-AC017028.1-1:1

Basic information

LNCipedia transcript ID: lnc-AC017028.1-1:1 ?
LNCipedia gene ID: lnc-AC017028.1-1
Location (hg19): chr2:240115027-240117153
Strand: -
Class: intronic
Transcript size: 2127 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT077791; NR_026664
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -11.5271 non-coding ?
CPAT coding probability 4.67% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-AC017028.1-1:1 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Charpentier (2016), IRES-dependent translation of the long non coding RNA meloe in melanoma cells produces the most immunogenic MELOE antigens., Oncotarget


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.0 lnc-AC017028.1-1:1
3.1 lnc-AC017028.1-1:1