Transcript: lnc-ACER2-7:1

Basic information

LNCipedia transcript ID: lnc-ACER2-7:1 
LNCipedia gene ID: lnc-ACER2-7
Ensembl Gene ID: ENSG00000261402
Ensembl Transcript ID: ENST00000568063
Location (hg38): chr9:19926094-19929937
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3844 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568063.1; RP11-378I6.1-001; OTTHUMT00000431078.1; NONHSAT130343
Alternative gene names: ENSG00000261402.1; RP11-378I6.1; OTTHUMG00000175790.1; AL591222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6097 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACER2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACER2-2:1
4.0 lnc-ACER2-2:1
4.1 lnc-ACER2-2:1
5.0 lnc-ACER2-2:1
5.1 lnc-RECK-158:1
5.2 lnc-ACER2-7:1