Transcript: lnc-ACKR3-1:3

Basic information

LNCipedia transcript ID: lnc-ACKR3-1:3 
LNCipedia gene ID: lnc-ACKR3-1
Ensembl Gene ID: ENSG00000232328
Ensembl Transcript ID: ENST00000455068
Location (hg38): chr2:236733382-236752806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003130; ENST00000455068; ENST00000455068.1; AC011286.1-001; OTTHUMT00000329067.1; NONHSAT077614
Alternative gene names: XLOC_001906; linc-COPS8; ENSG00000232328; AC011286.1; ENSG00000232328.1; OTTHUMG00000153025.1; AC084030.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.4123 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACKR3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCR7-1:1
3.1 lnc-CXCR7-1:1
4.0 lnc-CXCR7-1:1
4.1 lnc-CXCR7-1:1
5.0 lnc-CXCR7-1:1
5.1 lnc-ACKR3-1:1
5.2 lnc-ACKR3-1:3