Transcript: lnc-ACOT11-2:1

Basic information

LNCipedia transcript ID: lnc-ACOT11-2:1 
LNCipedia gene ID: lnc-ACOT11-2
Ensembl Gene ID: ENSG00000232245
Ensembl Transcript ID: ENST00000447150
Location (hg38): chr1:54416256-54420860
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 289 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000201; ENST00000447150; ENST00000447150.1; RP4-705F19.1-001; OTTHUMT00000023024.1; NONHSAT003376
Alternative gene names: XLOC_000201; linc-ACOT11-2; ENSG00000232245; RP4-705F19.1; ENSG00000232245.1; OTTHUMG00000008362.1; AL035415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -272.5675 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACOT11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACOT11-2:1
3.1 lnc-ACOT11-2:1
4.0 lnc-ACOT11-2:1
4.1 lnc-ACOT11-2:1
5.0 lnc-ACOT11-2:1
5.1 lnc-ACOT11-6:1
5.2 lnc-ACOT11-2:1