Transcript: lnc-ACOX3-3:1

Basic information

LNCipedia transcript ID: lnc-ACOX3-3:1 
LNCipedia gene ID: lnc-ACOX3-3
Ensembl Gene ID: ENSG00000258507
Ensembl Transcript ID: ENST00000557144
Location (hg38): chr4:8858715-8860827
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 562 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557144.1; RP13-582L3.4-001; OTTHUMT00000410922.1; NONHSAT095115
Alternative gene names: ENSG00000258507.1; RP13-582L3.4; OTTHUMG00000170901.1; AC116612.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.4119 non-coding 
CPAT coding probability 10.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACOX3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOX3-3:1
4.0 lnc-ACOX3-3:1
4.1 lnc-ACOX3-3:1
5.0 lnc-ACOX3-3:1
5.1 lnc-AFAP1-13:1
5.2 lnc-ACOX3-3:1