Transcript: lnc-ACP1-3:2

Basic information

LNCipedia transcript ID: lnc-ACP1-3:2 
LNCipedia gene ID: lnc-ACP1-3
Ensembl Gene ID: ENSG00000227061
Ensembl Transcript ID: ENST00000437798
Location (hg38): chr2:197569-202605
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4775 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002784; ENST00000437798.1; AC079779.7-001; OTTHUMT00000322421.1; NONHSAT068486
Alternative gene names: XLOC_001300; linc-ACP1; ENSG00000227061.1; AC079779.7; OTTHUMG00000151377.1; AC079779.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6004 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACP1-2:2
3.1 lnc-ACP1-3:2
4.0 lnc-ACP1-3:2
4.1 lnc-ACP1-3:2
5.0 lnc-ACP1-3:2
5.1 lnc-SNX17-308:2
5.2 lnc-ACP1-3:2