Transcript: lnc-ACP1-5:2

Basic information

LNCipedia transcript ID: lnc-ACP1-5:2 
LNCipedia gene ID: lnc-ACP1-5
Ensembl Gene ID: ENSG00000226277
Ensembl Transcript ID: ENST00000449621
Location (hg38): chr2:421133-422303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002790; ENST00000449621; ENST00000449621.1; AC105393.2-001; OTTHUMT00000322348.1; NONHSAT068550
Alternative gene names: XLOC_001304; linc-SNTG2-8; ENSG00000226277; AC105393.2; ENSG00000226277.1; OTTHUMG00000151358.1; AC105393.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -735.7196 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACP1-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACP1-4:2
3.1 lnc-ACP1-5:2
4.0 lnc-ACP1-5:2
4.1 lnc-ACP1-5:2
5.0 lnc-ACP1-5:2
5.1 lnc-SNX17-299:2
5.2 lnc-ACP1-5:2