Transcript: lnc-ACP2-2:1

Basic information

LNCipedia transcript ID: lnc-ACP2-2:1 
LNCipedia gene ID: lnc-ACP2-2
Ensembl Gene ID: ENSG00000256746
Ensembl Transcript ID: ENST00000543925
RefSeq ID: NR_120569
Location (hg38): chr11:47270657-47272110
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000543925.1; RP11-17G12.3-001; OTTHUMT00000396810.1; NONHSAT021229; NR_120569; ENST00000543925.5; NR_120569.1
Alternative gene names: ENSG00000256746.1; RP11-17G12.3; OTTHUMG00000167884.1; ENSG00000256746.5; AC018410.1; LOC101928943


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2766 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACP2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACP2-2:1
4.0 lnc-ACP2-2:1
4.1 lnc-ACP2-2:1
5.0 lnc-ACP2-2:1
5.1 lnc-OR5W2-53:1
5.2 lnc-ACP2-2:1