Transcript: lnc-ACP2-2:2

Basic information

LNCipedia transcript ID: lnc-ACP2-2:2 
LNCipedia gene ID: lnc-ACP2-2
Ensembl Gene ID: ENSG00000256746
Ensembl Transcript ID: ENST00000545474
Location (hg38): chr11:47270666-47272075
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 492 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545474.1; RP11-17G12.3-002; OTTHUMT00000396811.1; NONHSAT021230
Alternative gene names: ENSG00000256746.1; RP11-17G12.3; OTTHUMG00000167884.1; ENSG00000256746.5; AC018410.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2766 non-coding 
CPAT coding probability 31.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACP2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACP2-2:2
4.0 lnc-ACP2-2:2
4.1 lnc-ACP2-2:2
5.0 lnc-ACP2-2:2
5.1 lnc-OR5W2-53:2
5.2 lnc-ACP2-2:2