Transcript: lnc-ACSF3-1:6

Basic information

LNCipedia transcript ID: lnc-ACSF3-1:6 
LNCipedia gene ID: lnc-ACSF3-1
Ensembl Gene ID: ENSG00000259989
Ensembl Transcript ID: ENST00000562040
Location (hg38): chr16:88984032-88995369
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562040.1; CTD-2555A7.1-001; OTTHUMT00000430364.1; NONHSAT144458
Alternative gene names: ENSG00000259989.1; CTD-2555A7.1; OTTHUMG00000175523.1; AC135782.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 15.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACSF3-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-830F9.6.1-1:1
4.0 lnc-RP11-830F9.6.1-1:1
4.1 lnc-RP11-830F9.6.1-1:1
5.0 lnc-RP11-830F9.6.1-1:1
5.1 lnc-SPG7-35:1
5.2 lnc-ACSF3-1:6