Transcript: lnc-ACSM3-1:4

Basic information

LNCipedia transcript ID: lnc-ACSM3-1:4 
LNCipedia gene ID: lnc-ACSM3-1
Ensembl Gene ID: ENSG00000260201
Ensembl Transcript ID: ENST00000565300
Location (hg38): chr16:20580999-20586640
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565300.2
Alternative gene names: ENSG00000260201.2; RP11-143N13.2; AC141273.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.2661 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACSM3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ACSM3-1:4
4.1 lnc-ACSM3-1:4
5.0 lnc-ACSM3-1:4
5.1 lnc-TMC5-25:2
5.2 lnc-ACSM3-1:4