Transcript: lnc-ACSS3-2:1

Basic information

LNCipedia transcript ID: lnc-ACSS3-2:1 
LNCipedia gene ID: lnc-ACSS3-2
Location (hg38): chr12:81378042-81430343
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000546936.1; RP11-315E17.1-001; OTTHUMT00000408180.1; NONHSAT029704
Alternative gene names: ENSG00000258162.1; RP11-315E17.1; OTTHUMG00000170247.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2556 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACSS3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACSS3-2:1
4.0 lnc-ACSS3-2:1
4.1 lnc-ACSS3-2:1
5.0 lnc-ACSS3-2:1
5.1 lnc-METTL25-8:1
5.2 lnc-ACSS3-2:1