Transcript: lnc-ACSS3-2:2

Basic information

LNCipedia transcript ID: lnc-ACSS3-2:2 
LNCipedia gene ID: lnc-ACSS3-2
Ensembl Gene ID: ENSG00000258162
Ensembl Transcript ID: ENST00000550272
Location (hg38): chr12:81417261-81472954
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 737 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550272.1; RP11-315E17.1-002; OTTHUMT00000408181.1; NONHSAT029705
Alternative gene names: ENSG00000258162.1; RP11-315E17.1; OTTHUMG00000170247.1; ENSG00000258162.2; AC069228.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.3378 non-coding 
CPAT coding probability 10.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACSS3-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACSS3-2:2
4.0 lnc-ACSS3-2:2
4.1 lnc-ACSS3-2:2
5.0 lnc-ACSS3-2:2
5.1 lnc-METTL25-8:3
5.2 lnc-ACSS3-2:2