Transcript: lnc-ACTR2-3:13

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:13 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:65436730-65483146
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536804; ENST00000536804.1; AC074391.1-201; NONHSAT147094
Alternative gene names: ENSG00000204929; AC074391.1; ENSG00000204929.6; OTTHUMG00000152768.5; ENSG00000204929.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.422 non-coding 
CPAT coding probability 25.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:13 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTR2-2:1
3.1 lnc-ACTR2-2:1
4.0 lnc-ACTR2-3:13
4.1 lnc-ACTR2-3:13
5.0 lnc-ACTR2-3:13
5.1 lnc-AFTPH-40:14
5.2 lnc-ACTR2-3:13