Transcript: lnc-ACTR2-3:15

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:15 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:65725461-65754954
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1752 bp
Exons: 6
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT071192; FPKM1_group_16329_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.8808 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:15 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACTR2-2:5
4.0 lnc-ACTR2-3:15
4.1 lnc-ACTR2-3:15
5.0 lnc-ACTR2-3:15
5.1 lnc-AFTPH-40:20
5.2 lnc-ACTR2-3:15