Transcript: lnc-ACTR2-3:19

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:19 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:66078260-66084638
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002704; NONHSAT071207
Alternative gene names: XLOC_001506; linc-MEIS1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.7907 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:19 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-4:1
3.1 lnc-MEIS1-4:1
4.0 lnc-ACTR2-3:19
4.1 lnc-ACTR2-3:19
5.0 lnc-ACTR2-3:19
5.1 lnc-AFTPH-40:34
5.2 lnc-ACTR2-3:19