Transcript: lnc-ACTR2-3:22

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:22 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:65435937-65628437
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000204929.7|MICT00000190709.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -125.6836 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:22 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ACTR2-3:22
5.0 lnc-ACTR2-3:22
5.1 lnc-AFTPH-40:1
5.2 lnc-ACTR2-3:22