Transcript: lnc-ACTR2-3:5

Basic information

LNCipedia transcript ID: lnc-ACTR2-3:5 
LNCipedia gene ID: lnc-ACTR2-3
Location (hg38): chr2:65726590-65754902
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 229 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00002702
Alternative gene names: XLOC_001504; linc-MEIS1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.9344 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTR2-3:5 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTR2-3:5
3.1 lnc-ACTR2-3:5
4.0 lnc-ACTR2-3:5
4.1 lnc-ACTR2-3:5
5.0 lnc-ACTR2-3:5
5.1 lnc-AFTPH-40:25
5.2 lnc-ACTR2-3:5