Transcript: lnc-ACTRT3-2:2

Basic information

LNCipedia transcript ID: lnc-ACTRT3-2:2 
LNCipedia gene ID: lnc-ACTRT3-2
Ensembl Gene ID: ENSG00000270141
Ensembl Transcript ID: ENST00000602385
Location (hg38): chr3:169764520-169765060
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000602385.1
Alternative gene names: ENSG00000270141.2; TERC; ENSG00000270141.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1131.0977 non-coding 
CPAT coding probability 12.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTRT3-2:2 no no no no

Available literature

  1. Smolle (2015), Long Non-Coding RNAs in Endometrial Carcinoma., Int J Mol Sci
  2. Chu (2012), Chromatin isolation by RNA purification (ChIRP)., J Vis Exp
  3. Troy (2012), Genetic "lnc"-age of noncoding RNAs to human disease., J. Clin. Invest.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC078802.1-2:1
4.0 lnc-AC078802.1-2:1
4.1 lnc-AC078802.1-2:1
5.0 lnc-AC078802.1-2:1
5.1 lnc-TBL1XR1-59:2
5.2 lnc-ACTRT3-2:2