Transcript: lnc-ACVRL1-1:4

Basic information

LNCipedia transcript ID: lnc-ACVRL1-1:4 
LNCipedia gene ID: lnc-ACVRL1-1
Location (hg38): chr12:51921652-51923361
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 398 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT028312
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0517 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACVRL1-1:4 yes no no no

Available literature

  1. Chen (2015), PU.1-Regulated Long Noncoding RNA lnc-MC Controls Human Monocyte/Macrophage Differentiation through Interaction with MicroRNA 199a-5p., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACVR1B-1:2
4.0 lnc-ACVRL1-1:4
4.1 lnc-ACVRL1-1:4
5.0 lnc-ACVRL1-1:4
5.1 lnc-ANKRD33-1:3
5.2 lnc-ACVRL1-1:4