Transcript: lnc-ADAM22-2:1

Basic information

LNCipedia transcript ID: lnc-ADAM22-2:1 
LNCipedia gene ID: lnc-ADAM22-2
Ensembl Gene ID: ENSG00000228113
Ensembl Transcript ID: ENST00000447058
Location (hg38): chr7:88229659-88231774
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447058.2; AC005075.5-001; OTTHUMT00000338908.2; NONHSAT121863; FPKM1_group_29950_transcript_1
Alternative gene names: ENSG00000228747.2; AC005075.5; OTTHUMG00000023862.8; ENSG00000228113.3; AC003991.3; ENSG00000228113.7; AC003991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.8371 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM22-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAM22-2:1
4.0 lnc-ADAM22-2:1
4.1 lnc-ADAM22-2:1
5.0 lnc-ADAM22-2:1
5.1 lnc-LAMTOR4-138:9
5.2 lnc-ADAM22-2:1