Transcript: lnc-ADAM29-5:5

Basic information

LNCipedia transcript ID: lnc-ADAM29-5:5 
LNCipedia gene ID: lnc-ADAM29-5
RefSeq ID: NR_125900
Location (hg38): chr4:174831728-174875964
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1725 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007414; NONHSAT099329; NR_125900; NR_125900.1
Alternative gene names: XLOC_003789; linc-ADAM29-1; LOC101928551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0557 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM29-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEP44-5:3
3.1 lnc-CEP44-5:3
4.0 lnc-ADAM29-5:5
4.1 lnc-ADAM29-5:5
5.0 lnc-ADAM29-5:5
5.1 lnc-GALNTL6-29:4
5.2 lnc-ADAM29-5:5