Transcript: lnc-ADAMTS16-2:2

Basic information

LNCipedia transcript ID: lnc-ADAMTS16-2:2 
LNCipedia gene ID: lnc-ADAMTS16-2
Ensembl Gene ID: ENSG00000249941
Ensembl Transcript ID: ENST00000505404
Location (hg38): chr5:4866521-4874759
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 471 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009335; ENST00000505404; ENST00000505404.1; CTD-2046I8.1-001; OTTHUMT00000365585.2; NONHSAT100149
Alternative gene names: XLOC_004268; linc-ADAMTS16-2; ENSG00000249941; CTD-2046I8.1; ENSG00000249941.1; OTTHUMG00000161645.2; AC026415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.5 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS16-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS16-2:2
3.1 lnc-ADAMTS16-2:2
4.0 lnc-ADAMTS16-2:2
4.1 lnc-ADAMTS16-2:2
5.0 lnc-ADAMTS16-2:2
5.1 lnc-CARD6-339:3
5.2 lnc-ADAMTS16-2:2