Transcript: lnc-ADAMTS18-4:1

Basic information

LNCipedia transcript ID: lnc-ADAMTS18-4:1 
LNCipedia gene ID: lnc-ADAMTS18-4
Ensembl Gene ID: ENSG00000261540
Ensembl Transcript ID: ENST00000563114
Location (hg38): chr16:78014683-78059454
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 488 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563114.1; RP11-281J9.2-001; OTTHUMT00000434014.1; NONHSAT143814
Alternative gene names: ENSG00000261540.1; RP11-281J9.2; OTTHUMG00000176848.1; AC079414.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -241.5433 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS18-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS18-4:1
4.0 lnc-ADAMTS18-4:1
4.1 lnc-ADAMTS18-4:1
5.0 lnc-ADAMTS18-4:1
5.1 lnc-MAF-21:1
5.2 lnc-ADAMTS18-4:1