Transcript: lnc-ADCYAP1-2:2

Basic information

LNCipedia transcript ID: lnc-ADCYAP1-2:2 
LNCipedia gene ID: lnc-ADCYAP1-2
Ensembl Gene ID: ENSG00000263551
Ensembl Transcript ID: ENST00000580781
Location (hg38): chr18:976590-1174804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580781.1; RP11-78F17.1-002; OTTHUMT00000441526.2; ENST00000580781.5
Alternative gene names: ENSG00000263551.1; RP11-78F17.1; OTTHUMG00000178322.2; ENSG00000263551.5; AP005328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.4191 non-coding 
CPAT coding probability 52.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ADCYAP1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADCYAP1-2:2
4.0 lnc-ADCYAP1-2:2
4.1 lnc-ADCYAP1-2:2
5.0 lnc-ADCYAP1-2:2
5.1 lnc-RIOK3-301:2
5.2 lnc-ADCYAP1-2:2