Transcript: lnc-ADD3-3:2

Basic information

LNCipedia transcript ID: lnc-ADD3-3:2 
LNCipedia gene ID: lnc-ADD3-3
Ensembl Gene ID: ENSG00000223381
Ensembl Transcript ID: ENST00000421481
Location (hg38): chr10:108710518-108839363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017868; ENST00000421481; ENST00000421481.1; RP11-655H13.2-001; OTTHUMT00000050244.1; NONHSAT016308
Alternative gene names: XLOC_008608; linc-ADD3-3; ENSG00000223381; RP11-655H13.2; ENSG00000223381.1; OTTHUMG00000019024.1; AL356476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5913 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADD3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADD3-3:2
3.1 lnc-ADD3-3:2
4.0 lnc-ADD3-3:2
4.1 lnc-ADD3-3:2
5.0 lnc-ADD3-3:2
5.1 lnc-SMC3-35:2
5.2 lnc-ADD3-3:2