Transcript: lnc-ADGRL3-7:1

Basic information

LNCipedia transcript ID: lnc-ADGRL3-7:1 
LNCipedia gene ID: lnc-ADGRL3-7
Ensembl Gene ID: ENSG00000249111
Ensembl Transcript ID: ENST00000512546
Location (hg38): chr4:59152834-59176146
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007541; ENST00000512546; ENST00000512546.1; RP11-622J8.1-001; OTTHUMT00000365887.1; NONHSAT096589
Alternative gene names: XLOC_003552; linc-LPHN3-3; ENSG00000249111; RP11-622J8.1; ENSG00000249111.1; OTTHUMG00000161728.1; AC108517.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.6142 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADGRL3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPHN3-6:1
3.1 lnc-LPHN3-7:1
4.0 lnc-LPHN3-7:1
4.1 lnc-LPHN3-7:1
5.0 lnc-LPHN3-7:1
5.1 lnc-CEP135-55:1
5.2 lnc-ADGRL3-7:1