Transcript: lnc-AFDN-1:2

Basic information

LNCipedia transcript ID: lnc-AFDN-1:2 
LNCipedia gene ID: lnc-AFDN-1
Location (hg38): chr6:167751310-167754958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3517 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000086965.1|ENCT00000380463.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9697 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFDN-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MLLT4-1:3
5.0 lnc-MLLT4-1:3
5.1 lnc-SYTL3-91:2
5.2 lnc-AFDN-1:2