Transcript: lnc-AFDN-1:4

Basic information

LNCipedia transcript ID: lnc-AFDN-1:4 
LNCipedia gene ID: lnc-AFDN-1
Location (hg38): chr6:167751446-167752083
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012018; NONHSAT116111
Alternative gene names: XLOC_005542; linc-MLLT4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.8499 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFDN-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MLLT4-1:1
3.1 lnc-MLLT4-1:1
4.0 lnc-MLLT4-1:1
4.1 lnc-MLLT4-1:1
5.0 lnc-MLLT4-1:1
5.1 lnc-SYTL3-91:4
5.2 lnc-AFDN-1:4